NYU Dataset

CXCR6 Promotes Dermal CD8+ T Cell Survival and Transition to Long-Term Tissue Residence

Part of: Lund Lab |
UID: 10652
* Corresponding Author
Description

Resident memory T cells (TRM) provide localized protection due to their position in barrier tissues. However, interstitial signals necessary for their formation and persistence are not properly understood. This study demonstrated that antigen-dependent induction of the chemokine receptor, CXCR6, is a conserved requirement for TRM formation in peripheral tissue after viral infection. Cutaneous murine viral infection was used to define the kinetics of CXCR6 expression and its impact on the transition of effector CD8+ T cells to long-term tissue residence. To understand where CXCR6 is turned on in the TRM differentiation trajectory, single-cell RNA sequencing was performed on interstitial CD8+ T cells. Congenically distinct, OT-1 T cells were transferred intravenously into C57BL/6J mice. The following day, mice were infected with vaccinia virus expressing OVA257–264. Live, extravascular OT-1 T cells were sorted from infected skin 21 days post infection and submitted for single-cell RNA sequencing to capture cells at the beginning of memory formation.

Subject of Study
Subject Domain
Keywords

Access

Restrictions
Free to All
Instructions
Single-cell RNA sequencing data are deposited in Gene Expression Omnibus (GEO).
Access via GEO

Single-cell RNA-seq data
Accession #: GSE223727

Associated Publications
Data Type
Equipment Used
10× Genomics Chromium
BD FACSymphony
BD LSR II
Illumina NovaSeq 6000
Keyence BZ-X810
Software Used
FlowJo v10.8.1
GraphPad Prism v9.0
iCellR v1.6.5
Metascape v3.5
scVelo v0.2.3
UMAP
velocyto v0.17
Grant Support
Lloyd J. Old STAR Program/Cancer Research Institute
RSG-18-169-01-LIB/American Cancer Society