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  • NYU Dataset

    Spatial Transcriptomics Stratifies Psoriatic Disease Severity

    Authors
    Rochelle L. Castillo
    Ikjot Sidhu
    Igor Dolgalev
    Tinyi Chu
    21 more author(s)...
    Description

    This study described human psoriasis (PsO), which is a prototypic immune-mediated condition with a high predilection for extra-cutaneous involvement. Although the cellular and molecular features of human inflammatory skin diseases have been identified, their tissue context and systemic impact remains unclear. Spatial transcriptomics was performed to explain the cellular landscape of both healthy and...

    Subject
    Genomics
    Access Rights
    Free to All
  • NYU Dataset

    Chronic Stress Primes Innate Immune Responses in Mice and Humans

    Authors
    Tessa J. Barrett
    Emma M. Corr
    Coen van Solingen
    Florencia Schlamp
    18 more author(s)...
    Description

    Psychological stress (PS) is linked with systemic inflammation. It accelerates inflammatory disease progression and monocytes are key in sustaining systemic inflammation. However, the mechanisms underlying stress-mediated inflammation and future health risk remains unknown. This study examined the impact of psychological stress on monocytes. They showed that PS induces remodeling of the chromatin landscape...

    Subject
    Genomics
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    Free to All
  • NYU Dataset

    MicroRNA-33 Silencing Reprograms the Immune Cell Landscape in Atherosclerotic Plaques

    Authors
    Milessa Silva Afonso
    Monika Sharma
    Martin Schlegel
    Coen van Solingen
    11 more author(s)...
    Description

    MicroRNA-33 (miR-33) targeted inhibition increases plasma HDL cholesterol and promotes atherosclerosis regression by enhancing reverse cholesterol transport and dampening plaque inflammation. This study showed how miR-33 inhibition alters the dynamic balance and transcriptional landscape of immune cells in atherosclerotic plaques. They used single cell RNA sequencing of aortic CD45+ cells, combined...

    Subject
    Genomics
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    Free to All
  • NYU Dataset

    Lymphatic Vessels Limits the Intratumoral T cell Repertoire in Melanoma

    Authors
    Maria M. Steele
    Ian D. Dryg
    Dhaarini Murugan
    Julia Femel
    6 more author(s)...
    Description

    CD8+ T cell accumulation in tumors is essential for effective immunotherapy. However, the mechanisms of lymphocyte transit are still unclear. This study examined lymphatic vessel-mediated effector CD8+ T cell exit limits the accumulation of a broad repertoire of functional CD8+ T cells that improve tumor control in combination with immune checkpoint blockade. They showed that tumor-associated lymphatic...

    Subject
    Cancer
    Genomics
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    Application Required
    Author Approval Required
  • NYU Dataset

    Targeting Succinate Receptor Effectively Inhibits Periodontal Disease

    Authors
    Yuqi Guo
    Fangxi Xu
    Scott C. Thomas
    Yanli Zhang
    10 more author(s)...
    Description

    Periodontal disease (PD) is induced by a bacterial dysbiosis in the oral cavity that stimulates inflammation and bone loss. This study showed elevation of succinate in PD, which aggravates the disease through the succinate receptor (SUCNR1). Metabolomics assay compared the succinate level in the subgingival plaque of patients with PD. RNAscope and Immunofluorescence assays were conducted to validate...

    Subject
    Genomics
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    Free to All
  • NYU Dataset

    Adipose Tissue Macrophages Adapt to Inflammatory and Metabolic Challenges

    Authors
    Hernandez Moura Silva
    Andre Bafica
    Gabriela Flavia Rodrigues-Luiz
    Jingyi Chi
    13 more author(s)...
    Description

    Adipose tissue macrophages (ATMs) change during metabolic stress and are thought to contribute to metabolic syndrome. This study examined ATM subpopulations in steady state and in response to nutritional and infectious challenges. They characterized the epididymal white adipose tissue (eWAT) lymphoid and myeloid cell populations under steady state using RNA sequencing to analyze the transcriptome of...

    Subject
    Genomics
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    Free to All
  • NYU Dataset

    Pathogen-Specific Gut Microbiomes Associated with Inflammatory Bowel Disease Outcomes

    Authors
    Jordan E. Axelrad
    Ze Chen
    Joseph C. Devlin
    Kelly V. Ruggles
    1 more author(s)...
    Description

    This study identified the gut microbiome during an acute enteric infection in patients with and without inflammatory bowel disease (IBD). A cross-sectional study was performed on 260 patients who underwent stool testing and tested positive for Clostridioides difficile, Escherichia coli, or norovirus, or negative for all pathogens, and 25 healthy controls. They collected the following data from the...

    Subject
    Chronic Disease
    Genomics
    Health Status
    Population Characteristics
    Risk Factors
    Surgery
    Access Rights
    Application Required
    Author Approval Required
  • NYU Dataset

    Transcription Factor RORα Enforces Stability of the Th17 Cell Effector Program

    Authors
    Jason A. Hall
    Maria Pokrovskii
    Lina Kroehling
    Bo-Ram Kim
    4 more author(s)...
    Description

    The transcription factor RORγt is important for T helper 17 (Th17) cell differentiation. This study examined the role of the closely-related RORα in regulating the Th17 effector program. For the study, mouse T cells were purified from lymph nodes and spleens of six to eight week old mice. The dataset includes RNA sequencing analysis of ex vivo Th17 cells from draining lymph nodes or spinal cords of...

    Subject
    Genomics
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    Free to All
  • NYU Dataset

    Translational Regulation of TFH Cell Differentiation and Autoimmune Pathogenesis

    Authors
    Preeyam S. Patel
    Sandra Perez-Baos
    Beth Walters
    Margo Orlen
    4 more author(s)...
    Description

    T follicular helper (TFH) cells are CD4+ T helper cells that are important for immune responses to infection and vaccination. This study examined the translational regulation required for CD4+ T helper cells to differentiate to TFH cells and its contribution to TFH cell participation in pathogenesis in autoimmune disease in animal models. The experiments for non-autoimmune studies were performed with...

    Subject
    Genomics
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    Free to All
  • NYU Dataset

    CXCR6 Promotes Dermal CD8+ T Cell Survival and Transition to Long-Term Tissue Residence

    Authors
    Taylor A. Heim
    Ziyan Lin
    Maria M. Steele
    Tenny Mudianto
    1 more author(s)...
    Description

    Resident memory T cells (TRM) provide localized protection due to their position in barrier tissues. However, interstitial signals necessary for their formation and persistence are not properly understood. This study demonstrated that antigen-dependent induction of the chemokine receptor, CXCR6, is a conserved requirement for TRM formation in peripheral tissue after viral infection. They used cutaneous...

    Subject
    Genomics
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    Application Required
    Author Approval Required