Description

Psychological stress (PS) is linked with systemic inflammation. It accelerates inflammatory disease progression and monocytes are key in sustaining systemic inflammation. However, the mechanisms underlying stress-mediated inflammation and future health risk remains unknown. This study examined the impact of psychological stress on monocytes. They showed that PS induces remodeling of the chromatin landscape and transcriptomic reprogramming of monocytes. For this study, C57BL/6 mice were used for all experiments. This dataset contains RNA and ATAC sequencing data. The data indicate that monocytes from stressed mice and humans exhibit activation of metabolic pathways and reduced chromatin accessibility at mitochondrial respiration-associated loci.

Subject of Study
Subject Domain
Keywords

Access

Restrictions
Free to All
Instructions
RNA and ATAC sequencing data have been deposited at the Gene Expression Omnibus (GEO).
Access via GEO


Accession #: GSE167536

Associated Publications
Data Type
Equipment Used
Agilent 2100 Bioanalyzer
Applied Biosystems QuantStudio 3
HESKA Element HT5
Illumina HiSeq 2500
Illumina HiSeq 4000
Software Used
basepair
bcl2fastq v2.20
biomaRt v2.40.5
Bowtie2 v2.3.4.1
clusterProfiler
deepTools v2.3.3
DESeq2 v1.24.0
DiffBind v3.3.0
FastQC v0.11.7
fastx_trimmer v0.0.13
featureCounts v1.6.3
ggplot2 v3.3.3
GO Enrichment Analysis
GraphPad Prism v8.0
GREAT
Ingenuity Pathway Analysis
Integrative Genomics Viewer v2.5.2
MACS
NucleoATAC
pheatmap v1.0.12
Python v2.7.3
R v4.0.2
Revigo
RStudio v1.3.1093
Sambamba v0.6.7
STAR v2.6.1d
Trimmomatic v0.36
Grant Support
19CDA34630066/American Heart Association
16SFRN28730002/American Heart Association
118CDA34110203/American Heart Association
18-A0-00-1001884/American Society of Hematology