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Results Found: 9
  • NYU Dataset

    RNA and TCR Sequencing Characterized Cytotoxic T Cells and TCR Clonality in Organ Transplant Recipients with Squamous Cell Carcinoma

    Authors
    Nicholas Frazzette
    Alireza Khodadadi-Jamayran
    Nicole Doudican
    Alexis Santana
    4 more author(s)...
    Description

    This dataset was collected to show that there is a decline in cytotoxic T cells and TCR clonality in organ transplant recipients (OTRs) with squamous cell carcinoma (SCC). In this study, 5 SCC tumor samples and 6 transplant-associated SCC (TSCC) tumor samples were analyzed. Among SCC samples, the male to female ratio was 3 to 2 and the mean patient age was 81 years. Among TSCC samples, the male to...

    Subject
    Cancer
    Genomics
    Surgery
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    Free to All
  • NYU Dataset

    Gene Expression and Transcription Factors are Modified in Human Keratinocytes Exposed to Solar Simulated Ultraviolet Radiation

    Authors
    Thomas L. Des Marais
    Thomas Kluz
    Dazhong Xu
    Xiaoru Zhang
    4 more author(s)...
    Description

    Ultraviolet radiation (UVR) from the sun is the major cause of skin cancer. However, genes and pathways altered by solar-simulated UVR (ssUVR), a mixture of UVA and UVB, still remains unclear. For this study, human HaCaT keratinocytes were exposed to a single dose or 5 repetitive doses of ssUVR. Analyses of gene expression profiles and functional annotation were performed at 24 hours after irradiation....

    Subject
    Cancer
    Genomics
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    Free to All
  • Generation R

    Authors
    Vincent W. V. Jaddoe
    Generation R Study Group
    Description

    Generation R is an ongoing prospective cohort study of child development from the prenatal period through young adulthood in a multi-ethnic population recruited from the Rotterdam, Netherlands metropolitan area. The study enrolled 9,778 mothers with a delivery date between April 2002 and January 2006; they had 9,749 live births. The primary objective of the study is to identify early environmental...

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    Akhgar Ghassabian
  • NYU Dataset

    Spatial Transcriptomics Stratifies Psoriatic Disease Severity

    Authors
    Rochelle L. Castillo
    Ikjot Sidhu
    Igor Dolgalev
    Tinyi Chu
    21 more author(s)...
    Description

    This study described human psoriasis (PsO), which is a prototypic immune-mediated condition with a high predilection for extra-cutaneous involvement. Although the cellular and molecular features of human inflammatory skin diseases have been identified, their tissue context and systemic impact remains unclear. Spatial transcriptomics was performed to explain the cellular landscape of both healthy and...

    Subject
    Genomics
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    Free to All
  • NYU Dataset

    Melanoma Clinicopathological-Biospecimen Database and Repository

    Authors
    Iman Osman
    Description

    Since 2002, the Interdisciplinary Melanoma Cooperative Group (IMCG) at Perlmutter Cancer Center has maintained one of the largest clinicopathologic resources, the Melanoma Clinicopathological-Biospecimen Database and Repository, for research on patients 18 years old and over with melanoma or at high risk for melanoma. Clinical data is stored in a secure REDCap database which contains 653 fields to...

    Subject
    Cancer
    Chronic Disease
    Genomics
    Risk Factors
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    Author Approval Required
  • NYU Dataset

    NR2F2 Isoform Unleashes a Metastatic Program in Melanoma

    Authors
    Veronica Davalos
    Claudia D. Lovell
    Richard Von Itter
    Igor Dolgalev
    17 more author(s)...
    Description

    This study described DNA methylation changes that accompany metastatic progression in melanoma patients and found localized methylation changes in the regulatory region of NR2F2. NR2F2 is an orphan-nuclear receptor that is essential for embryonic and neural crest cell (NCC) development. For this study, they examined DNA methylation profiles of NCCs and melanocytes as well as melanoma patient tissues...

    Subject
    Cancer
    Genomics
    Access Rights
    Free to All
  • NYU Dataset

    CXCR6 Promotes Dermal CD8+ T Cell Survival and Transition to Long-Term Tissue Residence

    Authors
    Taylor A. Heim
    Ziyan Lin
    Maria M. Steele
    Tenny Mudianto
    1 more author(s)...
    Description

    Resident memory T cells (TRM) provide localized protection due to their position in barrier tissues. However, interstitial signals necessary for their formation and persistence are not properly understood. This study demonstrated that antigen-dependent induction of the chemokine receptor, CXCR6, is a conserved requirement for TRM formation in peripheral tissue after viral infection. They used cutaneous...

    Subject
    Genomics
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  • NYU Dataset

    Lymphatic Vessel Transit Seeds Precursors to Cytotoxic Resident Memory T Cells in Skin Draining Lymph Nodes

    Authors
    Taylor A. Heim
    Austin C. Schultz
    Ines Delclaux
    Vanessa Cristaldi
    2 more author(s)...
    Description

    Resident memory T cells (TRM) provide localized protection in peripheral tissues to pathogens and cancer. However, how they develop during primary infection and their functional significance still remains unclear. This study observed the anatomical distribution of anti-viral CD8+ T cells as they simultaneously seed skin and lymph nodes (LN) TRM. They used a model of skin infection with restricted antigen...

    Subject
    Genomics
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  • NYU Dataset

    Biomimetic Extracellular Matrix Nanofibers Electrospun with Calreticulin Promote Synergistic Activity for Tissue Regeneration

    Authors
    Mary E. Stack
    Sarita Mishra
    Matangi Parimala Chelvi Ratnamani
    Haoyu Wang
    2 more author(s)...
    Description

    Previous studies showed the potential of calreticulin (CRT) protein in enhancing the rate and quality of wound healing in excisional animal wound models. This study determined if polycaprolactone (PCL)/type 1 collagen (Col1) nanofibers (NFs) could be used as an effective carrier for CRT while at the same time introducing further wound healing capability through the synergy of biological and physicochemical...

    Subject
    Anatomy
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    Author Approval Required