Description

Prostate cancer (PCa) is the most common cancer diagnosis among men in the United States. This study characterized the tumor immune microenvironment of localized PCa, including high-grade prostate cancer (HGPCa) and low-grade prostate cancer (LGPCa) through single-cell RNA sequencing and multicolor flow cytometry of freshly isolated prostatectomy specimens. PCa tumor samples were collected from patients at the NYU Langone Health and the VA New York Harbor Healthcare System before undergoing radical prostatectomy. The proportion of tumor-infiltrating immune cells in freshly resected PCa tissue from a prospective cohort of 32 patients was examined by flow cytometry. To further explore the transcriptional profiles of these dominant immune cell subsets, single-cell RNA sequencing was used to analyze six fresh prostatectomy samples: three patient samples with HGPCa and three patient samples with LGPCa. This dataset includes single-cell RNA sequencing and flow cytometry data.

Geographic Coverage
New York (State) - New York City
Subject of Study
Subject Domain
Population Age
Adult (19 years - 64 years)
Senior (65 years - 79 years)
Subject Gender
Male
Keywords

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Restrictions
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Author Approval Required
Instructions
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Associated Publications
Data Type
Equipment Used
10× Genomics Chromium
BD FACSAria III
BD LSRFortessa
Illumina HiSeq 4000
Software Used
Cell Ranger
FlowJo
Python
R
Seurat v3.2.0
SingleR