NYU Dataset

MPC309 Modulates Androgen Receptor Transcriptional Activity to Inhibit Therapy-Resistant Prostate Cancer

Part of: Garabedian Lab |
UID: 10744
* Corresponding Author
Description

Prostate cancer cells depend on the androgen receptor (AR) for survival and proliferation. This study examined the antitumor effects of compound MPC309, a trivalent display of ethisterone conjugated to a peptoid oligomer backbone that binds to the AR with nanomolar affinity. First, a structure-activity relationship study was performed to improve multivalent peptoid conjugate potency. Then, the impact of MPC309 on AR-mediated gene expression, AR occupancy, chromatin accessibility, and AR’s interaction with coregulatory proteins was examined. The dataset includes sequencing data, which contains ChIP sequencing, ATAC sequencing, and RNA sequencing data. For sequencing experiments, LNCaP-abl cells were cultured under androgen deprivation and treated with:

  • ChIP-seq: vehicle (DMSO), 1μM backbone, 1μM MPC309, 10nM DHT, or 10μM enzalutamide overnight
  • ATAC-seq: vehicle (DMSO), 1μM backbone, 1μM MPC309, 10nM DHT, or 10μM enzalutamide overnight
  • RNA-seq: vehicle (DMSO), 1μM peptoid backbone lacking the ethisterone moieties, 1μM MPC309, 10nM DHT, or 10μM enzalutamide overnight; vehicle (DMSO), 1μM MPC309, or 10μM ethisterone overnight
Subject of Study
Subject Domain
Keywords

Access

Restrictions
Free to All
Instructions
The datasets generated and analyzed during the current study are available in the Gene Expression Omnibus (GEO) repository.
Access via GEO

ChIP-seq data
Accession #: GSE236287

Access via GEO

ATAC-seq data
Accession #: GSE236288

Access via GEO

RNA-seq data
Accession #: GSE236286

Access via GEO

RNA-seq data
Accession #: GSE236088

Associated Publications
Data Type
Equipment Used
Agilent TapeStation System
BD LSRFortessa
Illumina HiSeq 2500
Illumina NovaSeq 6000
Leica SCN400 F
Molecular Devices SpectraMax M5
Qubit Fluorometer
SpeedVac
Thermo Scientific EASY-nLC 1000
Thermo Scientific EVOS M7000
Thermo Scientific Q Exactive
Software Used
Bowtie2
ChIPQC
Cutadapt
DESeq2
DiffBind
Enrichr
FACSDiva
FastQC
FlowJo
fpc
GraphPad Prism
HOMER
HTSeq
ImageJ
MACS2
MOSAIC
QuPath
ROSALIND
RSeQC
SEQUEST
SoftMax Pro
STAR
Grant Support
Prostate and Testicular Cancer Research and Education Fund/New York State Department of Health
2002890/NSF
MD/PhD Vilcek Scholars/NYU Langone Health