NYU Dataset
Dataset and Code to Model Dispersal Dynamics of SARS-CoV-2 Lineages During the First Epidemic Wave in New York City
UID: 10441
- Description
- To construct a fixed time-scaled phylogenetic tree, the investigators combined 828 viral genome sequences obtained from COVID-19 patients at NYU Langone Health between March and May 2020 with 1,899 background sequences that were contributed to the Nextstrain repository. A total of 2,727 SARS-CoV-2 genomic sequences are available in the dataset. The supporting R code included with the dataset will produce phylogenetic trees through discrete and continuous Bayesian phylogeographic methods.
- Timeframe
- 2020
- Geographic Coverage
-
New York (State) - New York City
Access
- Restrictions
-
Free to All
- Instructions
- R code and datasets are available publicly using the access link to the GitHub repository.
Observational
- Grant Support
-
12U7121N/Research Foundation - FlandersG0D5117N/Research Foundation - FlandersG0E1420N/Research Foundation - FlandersG098321N/Research Foundation - FlandersC14/18/094/Internal Funds KU Leuven
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