NYU Data Catalog

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  • NYU Dataset

    Dataset and Code to Model Dispersal Dynamics of SARS-CoV-2 Lineages During the First Epidemic Wave in New York City

    Authors
    Simon Dellicour
    Samuel L. Hong
    Bram Vrancken
    Antoine Chaillon
    9 more author(s)...
    Description

    To construct a fixed time-scaled phylogenetic tree, the investigators combined 828 viral genome sequences obtained from COVID-19 patients at NYU Langone Health between March and May 2020 with 1,899 background sequences that were contributed to the Nextstrain repository. A total of 2,727 SARS-CoV-2 genomic sequences are available in the dataset. The supporting R code included with the dataset will produce...

    Subject
    COVID-19
    Genomics
    Infectious Disease
    Timeframe
    2020
    Access Rights
    Free to All
  • NYU Dataset

    SARS-CoV-2 Vaccine Breakthrough Infections in the NYU Langone Health System

    Authors
    Ralf Duerr
    Dacia Dimartino
    Christian Marier
    Paul Zappile
    5 more author(s)...
    Description

    This dataset contains a list of accession numbers of SARS-CoV-2 genomes obtained from 76 patients at NYU Langone Health who were fully vaccinated with the BNT162b2 (Pfizer/BioNTech), mRNA-1273 (Moderna), or JNJ-78436735 (Janssen) COVID-19 mRNA vaccines but had breakthrough infections between February 1 and April 30, 2021. 37 were male and 39 were female; the median age of patients was 48 years. There...

    Subject
    COVID-19
    Genomics
    Infectious Disease
    Timeframe
    2021
    Access Rights
    Free to All
    Application Required
  • NYU Dataset

    Variant-specific introduction and dispersal dynamics of SARS-CoV-2 in New York City – from Alpha to Omicron

    Authors
    Simon Dellicour
    Samuel L. Hong
    Verity Hill
    Dacia Dimartino
    7 more author(s)...
    Description

    Utilizing genomic sequencing data collected from COVID-19 patients in New York City metropolitan area, investigators produced a comparison of the introduction and dispersal of the main SARS-CoV-2 variants (Alpha, Iota, Delta, and Omicron-BA.1) from 2020 through 2022. The analysis included 5,577 sequences obtained from samples collected as part of genomic surveillance at NYU Langone Health from December...

    Subject
    COVID-19
    Genomics
    Infectious Disease
    Access Rights
    Free to All