The National Center for Advancing Translational Sciences (NCATS) has systematically compiled clinical, laboratory and diagnostic data from electronic health records to support COVID-19 research efforts via the National COVID Cohort Collaborative (N3C) Data Enclave. As of August 2, 2022, the repository contains information from over 15 million patients (including 5.8 million COVID-19 positive patients)...

The dataset includes 864 genomic sequences obtained from COVID-19 patients aged 18 years old and above within the NYU Langone Health system between March 12 and May 10, 2020. Patients reflected the health system's catchment area (i.e., the greater New York City metropolitan area). rRNA-depleted total RNA was sequenced, underwent quality control, and analyzed to produce phylogenetic trees. Further...

Between March 2020 and May 2022, Gallup conducted a web survey on members of the Gallup Panel, a nationally representative sample of U.S. adults aged 18 and above, to assess attitudes and behaviors related to the COVID-19 pandemic. From March 13 through April 26, 2020, approximately 1,200 responses were collected daily from a randomly selected sample of panel members. From April 27 to August 16,...

To construct a fixed time-scaled phylogenetic tree, the investigators combined 828 viral genome sequences obtained from COVID-19 patients at NYU Langone Health between March and May 2020 with 1,899 background sequences that were contributed to the Nextstrain repository. A total of 2,727 SARS-CoV-2 genomic sequences are available in the dataset. The supporting R code included with the dataset will produce...

Through January 6, 2022, Global.health maintained an anonymized individual-level (line) dataset on COVID-19 cases. A list of all contributing institutions may be found here. The dataset collected the following information where reported/available: Demographics (e.g., sex, age range, gender, occupation, nationality, ethnicity) Geographic details Symptoms Event history (e.g., first consult...

The Emergency Use Authorization Database (EUAdb) contains information from the United States Food and Drug Administration (FDA) on emergency use authorizations (EUA) for RT-qPCR (real-time quantitative polymerase chain reaction) molecular testing protocols. The source documentation can be found on the FDA website. To create the EUAdb, information from the authorization letters and EUA summaries were...

A Delta-Omicron recombinant of the SARS-CoV-2 virus was sequenced and isolated from an immunosuppressed and unvaccinated male kidney transplant patient who received Sotrovimab for treatment of COVID-19. Further clinical details and medical history of the patient are described in the associated publication. Sotrovimab is a therapeutic monoclonal antibody (mAb) used to treat infections by the BA.1 Omicron...

This dataset contains a list of accession numbers of SARS-CoV-2 genomes obtained from 76 patients at NYU Langone Health who were fully vaccinated with the BNT162b2 (Pfizer/BioNTech), mRNA-1273 (Moderna), or JNJ-78436735 (Janssen) COVID-19 mRNA vaccines but had breakthrough infections between February 1 and April 30, 2021. 37 were male and 39 were female; the median age of patients was 48 years. There...

The Novel Coronavirus Illness Patient Report (NCIPR) dataset includes survey responses from 2,212 confirmed COVID-19 patients aged 18 to 98 who were treated at NYU Langone Health facilities between February 2020 and March 2021 and consented to the survey. Survey invitations were distributed two waves: once in February 2021 and once in March 2021. Between waves, 9 new items were added to the survey...

Investigators obtained high quality SARS-CoV-2 sequences from 132 vaccinated and 283 unvaccinated individuals who were seen at NYU Langone Health facilities between May 1, 2021 and August 3, 2021. Fully vaccinated individuals received either two doses of the BNT162b2 (Pfizer/BioNTech) or mRNA-1273 (Moderna) vaccines, or a single-dose of the COVID-19 Janssen vaccine. Breakthrough infections were defined...