SARS-CoV-2 Sequences from the NYU Langone Health COVID-19 Inpatient and Outpatient Population
- Description
The dataset includes 864 genomic sequences obtained from COVID-19 patients aged 18 years old and above within the NYU Langone Health system between March 12 and May 10, 2020. Patients reflected the health system's catchment area (i.e., the greater New York City metropolitan area).
rRNA-depleted total RNA was sequenced, underwent quality control, and analyzed to produce phylogenetic trees. Further details on materials and workflow utilized for sequence extraction can be found in the Methods section of the associated article.
- Timeframe
- 2020
- Geographic Coverage
-
New York (State)New York (State) - New York City
Access
- Restrictions
-
Free to AllApplication Required
- Instructions
Raw COVID-19 sequencing data produced in this study may be accessed through the NCBI BioProject repository.
Genetic sequences may also be found in the GISAID repository by searching for "NYUMC" in the nCov project. A GISAID account is required to access the genetic sequences in the GISAID repository.
- Grant Support
-
P50 CA016087/NCIMR/R015600/1/Medical Research Council Centre for Global Infectious Disease Analysis, School of Public Health, Imperial College London
- Other Resources
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Nextstrain
Visualization of COVID-19 evolution
Maurano Lab GithubScript for sequencing data processing