NYU Dataset

Age-Related Decline in NCKX4-Mediated Calcium Clearance Accelerates Aortic Remodeling and Drives Early Vascular Aging

Part of: Lacruz Lab |
UID: 10788
* Corresponding Author
Description

Aging is the strongest risk factor for cardiovascular diseases (CVDs), with older women facing a greater risk of CVDs than age-matched men. Vascular smooth muscle cells (VSMCs) dysfunction and impaired calcium (Ca2+) handling are recognized as central contributors to arterial stiffening and calcification. However, the molecular and functional determinants of Ca2+ clearance that drive vascular aging remains unclear. This study investigated the function of the potassium-dependent sodium/calcium exchanger NCKX4 in VSMCs from aortic tissue, and its pathogenesis underlying the development of vascular ageing, aortic remodeling, and calcification processes. For the study, RNA sequencing was performed on aortic tissue from young (12-15 weeks) and aged (72-78 weeks) female wild-type C57BL/6 mice and knockdown Nckx4-/- mice. The aortic tissue from two different mice was combined for each sample, totalling five samples (n = 5). This dataset includes RNA sequencing data.

Subject of Study
Subject Domain
Subject Sex
Female
Keywords

Access

Restrictions
Free to All
Instructions
The RNA sequencing data have been deposited in Gene Expression Omnibus (GEO).
Access via GEO

RNA-seq data
Accession #: GSE316510

Associated Publications
Data Type
Equipment Used
Agilent 2100 Bioanalyzer
Illumina NovaSeq X Plus
Software Used
apeglm v1.24.0
clusterProfiler v4.10.1
ComplexHeatmap v2.18.0
DESeq2 v1.42.1
fastp v0.24.0
ggplot2 v3.5.1
GraphPad Prism v10.5.0
MultiQC v1.25.1
Nextflow v23.10.1
R v4.3.3
removeBatchEffect v3.58.1
SingularityCE v4.1.0
STAR v2.7.11b
Subread v2.0.8
Grant Support
MA003/New York University
Department of Molecular Pathobiology Accelerator Award/NYU College of Dentistry