Description

The growing interest in diets that induce weight loss prompted this study to compare restriction of each individual essential amino acid (EAA) and cysteine. For the study, each of the essential amino acids (EAAs) and cysteine were individually removed from diet in Cse−/− and Cse+/− mice to induce weight loss. To evaluate the molecular responses triggered by cysteine deprivation, bulk RNA-sequencing analysis was performed on liver, muscle, and adipose tissue. After a 3-day calorie restriction (CR) control diet, Cse−/− and Cse+/− mice were shifted to either CR control, CR cysteine-free, or CR tryptophan-free diets, and tissues were collected after 2 days. To further characterize the weight loss, metabolic assessments were performed on Cse−/− and Cse+/− mice. After adapting to CR control diet, the mice were placed into metabolic cages and switched to the CR cysteine-free diet 2 days later. This dataset includes RNA sequencing and metabolomics data.

Subject of Study
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Instructions
RNA sequencing data generated and used for this project are available at Gene Expression Omnibus (GEO) and metabolomics data generated and used for this project are available at Metabolomics Workbench. Source data are provided with this paper on PubMed Central (PMC).
Access via GEO

RNA-seq data
Accession #: GSE280181

Access via Metabolomics Workbench

Metabolomics data
Accession #: 10.21228/M87Z47

Access via PMC

Source data

Associated Publications
Data Type
Equipment Used
Agilent Seahorse XFe24 Analyzer
IKA Ultra Turrax T8
Illumina NextSeq 2000
SpeedVac
Thermo Scientific Q Exactive HF
Software Used
CalR
DESeq2 v1.24.0
GO Enrichment Analysis
HISAT2 v2.1.0
HTSeq v11.069
Manhattanly v0.2.0
pheatmap v1.0.12
PhenoMaster v8.1.4.14156
ReAdW v4.3.1
SciPy v1.1.0
Grant Support
Howard Hughes Medical Institute/Howard Hughes Medical Institute
Blavatnik Family Foundation/Blavatnik Family Foundation
RGPIN-2023-05099/Natural Sciences and Engineering Research Council of Canada
CGCATF-2021/100022/Cancer Research UK/National Cancer Institute
RSG-21-115-01-MM/American Cancer Society