NYU Dataset

PRC1 Sustains the Integrity of Neural Fate in the Absence of PRC2 Function

Part of: Dasen Lab |
UID: 10647
* Corresponding Author
Description

Polycomb repressive complexes (PRCs) are known for repressing transcription through histone modifications and chromatin compaction. The PRCs consist of two central protein complexes, PRC1 and PRC2, which are important for normal gene regulation and development. This study found that PRC1 is essential for the specification of segmentally restricted spinal motor neuron subtypes, while PRC2 activity is unnecessary for maintaining motor neuron positional identities during terminal differentiation. They examined mice in which core subunit-encoding genes were selectively removed from motor neuron progenitors to determine the relative contributions of PRC1 and PRC2 to neuronal specification. The dataset includes RNA sequencing and ATAC sequencing data. These results indicate that PRC1 function is essential during terminal differentiation to specify the transcriptional identities of motor neurons.

Subject of Study
Subject Domain
Keywords

Access

Restrictions
Free to All
Instructions
RNA sequencing and ATAC sequencing data are available through Gene Expression Omnibus (GEO).
Access via GEO

RNA-seq and ATAC-seq data
Accession #: GSE175503

Associated Publications
Data Type
Equipment Used
Agilent 2100 Bioanalyzer
BTX ECM 830
Illumina HiSeq 4000
Illumina NovaSeq 6000
LightCycler 480 System
Software Used
bedGraphToBigWig v4
bedtools v2.17.0
Bowtie2 v2.2.4
ChIPseeker v1.8.0
DESeq2
GraphPad Prism v8.0
HOMER v4.10
HTSeq v0.6.0
MACS v1.4.2
ngs.plot v2.47
Picard v1.126
R v3.1.1
STAR v2.5.0c
ZEN
Grant Support