NYU Dataset

Dopamine Neurons in Caenorhabditis elegans Governs Food Response Behaviors

Part of: Ringstad Lab |
UID: 10634
* Corresponding Author
Description

Caenorhabditis elegans (C. elegans) uses specialized mechanosensory neurons to detect food. These neurons release dopamine to suppress foraging and promote dwelling. This study identified genes highly expressed in dopaminergic food-sensing neurons and screened for defects in the food-triggered slowing behavior mediated by these neurons. They found a K2P-family potassium channel gene TWK-2 that mutates to cause increased basal activity of dopamine neurons and exaggerated food-induced slowing. C. elegans embryonic cell cultures were obtained from animals carrying integrated trangenes that fluorescently label both dopamine and serotonin neurons. Embryos were harvested from a synchronous population of young adult hermaphrodites carrying a single row of eggs. This dataset includes RNA sequencing data from dopamine and serotonin neurons.

Subject of Study
Subject Domain
Keywords

Access

Restrictions
Free to All
Instructions
RNA sequencing data are publicly available in Gene Expression Omnibus (GEO) database.
Access via GEO

RNA sequencing data
Accession #: GSE228099

Associated Publications
Data Type
Equipment Used
Agilent 2100 Bioanalyzer
Andor EMCCD Camera
BD FACSAria IIu SORP
Illumina HiSeq 2500
Thorlabs KPZ101
Thorlabs PAS005
TILL Photonics Polychrome V
UniBrain CCD Camera
Zeiss LSM 700
Software Used
Adobe Illustrator
DESeq2
FastQ Screen
GraphPad Prism v9.0
HTSeq
ImageJ
Imaris
Live Acquisition
MATLAB
Picard
Seq-N-Slide
StackReg
STAR
Grant Support
Pew Charitable Trusts/Pew Charitable Trusts