NYU Dataset

NOGOB Receptor Deficiency Increases Cerebrovascular Permeability and Hemorrhage

UID: 10611
* Corresponding Author
Description

Cerebral cavernous malformation (CCM) lesions are caused by loss of function of CCM genes. Previous study showed that NOGOB receptor (NGBR) knockout in endothelial cells results in cerebrovascular lesions in the mouse embryo. However, the molecular mechanism by which NGBR regulates CCM1/2 expression has not been explained. To determine the molecular mechanism, RNA sequencing analysis was used to examine changes in the transcriptome in human brain microvascular endothelial cells (HBMVECs). Validated small interfering RNA was used to knockdown NGBR in HBMVECs. Then, isolated RNA was used to examine the alteration of transcriptomic profiling using RNA sequencing. The results indicate that NGBR-mediated histone acetylation is a potential target for preventing the onset and progression of sporadic CCM.

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Access

Restrictions
Free to All
Instructions
The sequencing data are deposited in Gene Expression Omnibus (GEO).
Access via GEO

RNA-seq data
Accession #: GSE198351

Associated Publications
Data Type
Equipment Used
Agilent Fragment Analyzer System
Illumina HiSeq 2000
PerkinElmer Microplate Reader
Reichert-Jung Ultracut Microtome
Zeiss EM900
Software Used
edgeR
GO Enrichment Analysis
GraphPad Prism
IBM SPSS
ImageJ
MAP-Rseq
MSigDB v7.3
ToppGene
Grant Support
GRNT33671180/American Heart Association