NYU Dataset

PIM1 Phosphorylation Regulates Gene Transcription in Prostate Cancer

UID: 10603
* Corresponding Author
Description

Previous study showed that PIM1 phosphorylates the androgen receptor (AR), the primary therapeutic target in prostate cancer. This study examined the mechanism how PIM1 phosphorylation of AR alters its transcriptional activity. They identified the AR co-activator, 14-3-3 ζ, as an endogenous PIM1 substrate in LNCaP cells. Rapid immunoprecipitation and mass spectrometry of endogenous proteins on chromatin was used to find that select AR co-regulators interact with both AR and 14-3-3 ζ in PIM1 over-expressing cells. This dataset includes mass spectrometry and sequencing data. The publication also includes supplementary data on AR and 14-3-3 ζ interacting proteins identified by mass spectrometry and spectra counts, proteins that overlap between AR and 14-3-3 ζ, and the amount of AR pulled down by 14-3-3 ζ and vice versa. In addition, there are source data for the figures in the publication.

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Restrictions
Free to All
Instructions
The mass spectrometry data have been deposited to the ProteomeXchange Consortium via the Proteomics Identifications (PRIDE) database and the sequencing data have been deposited in the Gene Expression Omnibus (GEO) database. All other data generated or analyzed during this study are included in this article on PubMed Central (PMC) under Supplementary Information.
Access via PRIDE

Mass spectrometry data
Accession #: PXD023623

Access via PRIDE

Mass spectrometry data
Accession #: PXD023634

Access via GEO

Sequencing data
Accession #: GSE181226

Access via GEO

ChIP-seq data
Accession #: GSE181224

Access via GEO

RNA-seq data
Accession #: GSE181225

Access via PMC

Other data
Accession #: PMC8546101

Associated Publications
Data Type
Equipment Used
Applied Biosystems QuantStudio 6
Eppendorf ThermoMixer
Illumina NovaSeq 6000
Thermo Scientific NanoDrop One
Software Used
Andromeda
Bowtie2
ChIPQC
Cutadapt
DESeq2
DiffBind
FastQC
fpc
GraphPad Prism v8.0
HOMER
HTSeq
MACS2
MaxQuant v1.6
Metascape
MOSAIC
Proteome Discoverer v2.1
ROSALIND
RSeQC
SEQUEST
STAR
topGO
UniProt
Grant Support
Howard Hughes Medical Institute/Howard Hughes Medical Institute
Blavatnik Family Foundation/Blavatnik Family Foundation