NYU Dataset
Transposon Insertion Profiling by Sequencing Utilized for LINE-1 Mapping in GM12878 Cells
Part of: Fenyo Lab |
UID: 10460
- Description
This study reported a genome-wide long interspersed element-1 (LINE-1) insertion site mapping method for bulk DNA. They demonstrated that transposon insertion profiling by sequencing (TIPseq) is useful for LINE-1 mapping in GM12878 cells. In addition, they evaluated the performance of different procedures and compared them to TIPseq in bulk DNA. This dataset contains sequencing data as well as supplementary data tied to the publication. The supplementary data includes data on primers for quality control quantitative polymerase chain reaction and multiple displacement amplification or multiple annealing and looping-based amplification cycles.
Access
- Restrictions
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Free to All
- Instructions
- The sequencing data are deposited to Sequence Read Archive (SRA) through BioProject. All other data are present in the article on PubMed Central (PMC) under Supplementary Material.
- Grant Support
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