NYU Dataset

Drosophila Fatty Acid Binding Protein Essential for Light-Dependent Rhodopsin-1 Degradation and Photoreceptor Survival

Part of: Ryoo Lab |
UID: 10641
* Corresponding Author
Description

Rhodopsins are light-detecting proteins associated with retinal chromophores. Dysfunctional Rhodopsins cause retinal degeneration in humans and model organisms. However, the mechanisms by which photoreceptors regulate Rhodopsin homeostasis remains unknown. This study performed a photoreceptor-specific gene expression profiling analysis to examine how photoreceptors respond to stress. For their investigation, they used Drosophila as a model since it has multiple Rhodopsins. The dataset contains RNA sequencing data. These data revealed that Drosophila fatty acid binding protein is a gene required for Rhodopsin-1 protein homeostasis and photoreceptor survival.

Subject of Study
Subject Domain
Keywords

Access

Restrictions
Free to All
Instructions
RNA sequencing raw data have been deposited in Gene Expression Omnibus (GEO). All other relevant data are available on PubMed Central (PMC) under Supplementary Materials.
Access via GEO

RNA sequencing data
Accession #: GSE185134

Access via PMC

Source data for publication figures

Associated Publications
Data Type
Equipment Used
Agilent 2100 Bioanalyzer
Illumina NovaSeq 6000
Philips CM12
Software Used
bcl2fastq2 v2.20
DigitalMicrograph
FastQ Screen v0.13.0
GraphPad Prism
ImageJ
R v3.6.1
Real Time Analysis v3.4.4
Seq-N-Slide
STAR v2.6.1d
Subread package v1.6.3
Grant Support