NYU Dataset

Bilateral Medial Entorhinal Cortex Silencing Causes Remapping in CA1 Cell Assemblies

Part of: Buzsaki Lab |
UID: 10544
* Corresponding Author
Description

The discovery of grid cells in the medial entorhinal cortex (mEC) encouraged investigation of the effect of the mEC on the hippocampus. Large lesions of the entorhinal cortex reduced theta oscillations, decreased the fraction of hippocampal CA1 place cells, and affected various features of place field properties. This study performed combined optogenetic and pharmacogenetic local and upstream inactivation in the hippocampus. To silence the mEC, all types of GABAergic interneurons were infected in C57BL/6 transgenic mice by AAV5-mDlx-ChR2- mCherry virus in one or both hemispheres. The virus evenly infected large populations of interneurons throughout the dorsal and mid parts of the superficial layers of mEC, as well as interneurons within the deep layers. In addition, mice were implanted with 64 or 128 channel silicon probes into CA1. The coordinates used for CA1 implants was either −1.8mm AP, +1.5 mm ML from bregma, or −2.0 AP, +1.7mm ML from bregma. This dataset contains electrophysiology and behavioral data.

Subject of Study
Subject Domain
Keywords

Access

Restrictions
Free to All
Instructions
The data for this study are available on Globus. All custom code for preprocessing the data and scripts specific for analyzing this dataset can be found on GitHub.
Access via Globus

Study data

Access via GitHub

Custom code for data preprocessing

Access via GitHub

MATLAB scripts for data analysis

Associated Publications
Data Type
Equipment Used
Basler acA1300-60gmNIR
Intan RHD2000 Evaluation System
Leica VT1000 S
Olympus VS120
Pulse Pal v2
Thorlabs PM100D
UMP3 UltraMicroPump
Software Used
CellExplorer
Chronux
FMAToolbox
Kilosort
KilosortWrapper
MATLAB R2021a
Phy
Phy Plugins
Grant Support
1707316/NSF
Leon Levy Fellowship in Neuroscience/Leon Levy Foundation