NYU Dataset

Lysosomal Dysfunction in Down Syndrome is APP-Dependent and Mediated by APP-βCTF

UID: 10524
* Corresponding Author
Description

Lysosomal failure plays an important role in the pathogenesis of many congenital neurodegenerative disorders, such as Alzheimer’s disease (AD) and Down syndrome (DS). This study showed that lysosomal dysfunction in DS requires the extra gene copy of amyloid precursor protein (APP) and is specifically mediated by the β cleaved carboxy terminal fragment of APP (APP-βCTF). In primary fibroblasts from individuals with DS, lysosomal degradation of autophagic and endocytic substrates is selectively impaired, which causes them to accumulate in enlarged autolysosomes/lysosomes. RNA sequencing was performed on six trisomic and six disomic human fibroblasts samples (3 replicates from 2 individuals in each group) from 5 months (3 replicates) and 2 years (3 replicates) old unrelated individuals treated with either small interfering RNA against human APP (siAPP) or a negative control dicer-substrate small interfering RNA (DsiRNA).

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Restrictions
Free to All
Instructions
RNA sequencing data have been deposited in Gene Expression Omnibus (GEO).
Access via GEO

RNA sequencing data
Accession #: GSE127880

Associated Publications
Data Type
Equipment Used
Agilent 2100 Bioanalyzer
Illumina HiSeq 2000
Zeiss LSM 880
Software Used
GraphPad Prism v6.0
HTSeq v0.6.1
ImageJ
limma
R
STAR v2.3.1z
Grant Support