NYU Dataset

Direct RNA Sequencing Reveals the Role of N6-Methyladenosine in Regulating Splicing of a Viral Pathogen

UID: 10478
* Corresponding Author
Description

Adenovirus is a nuclear replicating DNA virus that relies on the host cell machinery for productive infection. Processing and metabolism of cellular RNAs are regulated by METTL3, which catalyzes the addition of N6-methyladenosine (m6A) to messenger RNAs. Although m6A-modified adenoviral RNAs have been detected previously, the location and function of m6A within the infectious cycle is unknown. For this study, they examined m6A within the adenovirus transcriptome using a combination of methylated RNA immunoprecipitation (meRIP) sequencing and direct RNA long-read sequencing.

This study includes sequencing data. The publication also contains supplementary data that includes several tables. The tables contain data about sequencing statistics for meRIP and RNA sequencing experiments, meRIP sequencing derived MACS2 peak locations for mock-infected cellular genes, Ad5-infected cellular genes, viral genes, and peak widths, direct RNA sequencing statistics for experiments, locations of exome-level direct RNA sequencing analysis of m6A locations within viral transcripts, and locations of isoform-level direct RNA sequencing analysis of m6A locations within viral transcript isoforms.

Subject of Study
Subject Domain
Keywords

Access

Restrictions
Free to All
Instructions
Raw data generated as part of this study can be downloaded from the European Nucleotide Archive (ENA). All other data supporting the findings of this study are available within the article and the Supplementary Materials.
Access via ENA


Accession #: PRJEB35652

Associated Publications
Data Type
Equipment Used
Illumina HiSeq 2500
Illumina HiSeq 4000
Oxford Nanopore MinION
Zeiss LSM 710
Software Used
Adobe Illustrator 2020
Adobe Illustrator vCS6
Adobe Photoshop
bam-readcount
bedtools v2.27.1
deepTools2 v3.3.1
DRUMMER
Fiji v1.52p
GenomicRanges
ggplot2 v3.3.0
GSNAP v2019-09-12
Guppy v3.2.2
Gviz v3.10
HOMER v4.11
Integrative Genomics Viewer
MACS2 v2.1.2
minimap2 v2.15
Nanocompore
Nanopolish
NanopolishComp
RegTools v0.2.0
SampComp
SAMtools v1.9
STAR v2.5.4b
ZEN v2011
Grant Support
17PRE336700170/Burroughs Wellcome Fund
AHA Predoctoral Fellowship/American Heart Association
Natural Sciences and Engineering Research Council of Canada/Natural Sciences and Engineering Research Council of Canada
Sackler Institute of Graduate Biomedical Sciences/Sackler Institute of Graduate Biomedical Sciences