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  • NYU Dataset

    Deep and Superficial CA1 Place Cells Differentially Expressed Across Heterogeneous Environments

    Authors
    Farnaz Sharif
    Behnam Tayebi
    Gyorgy Buzsaki
    Sebastien Royer
    1 more author(s)...
    Description

    Several spatial coding mechanisms are known to coexist in the hippocampus. However, how are they influenced by various environmental features is still unclear. This study investigated the spatial coding characteristics of hippocampal neurons in mice and rats navigating in different environments. C57BL/6 mice and Long-Evans rats were used in this study. For both mice and rats, most CA1 cells were recorded...

    Subject
    Neurosciences
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  • NYU Dataset

    Inhibitory Conductance Controls Place Field Dynamics in the Hippocampus

    Authors
    Manuel Valero
    Andrea Navas-Olive
    Liset M. de la Prida
    Gyorgy Buzsaki
    Description

    Place cells receive a disparate collection of excitatory and inhibitory currents that provide them with spatially selective discharges and rhythmic activity. This study combined intracellular and extracellular recordings with computational modeling and optogenetic or chemogenetic manipulations to examine the influence of inhibitory and excitatory inputs on CA1 pyramidal cell responses. Homozygous CaMKIIa-Cre...

    Subject
    Neurosciences
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  • NYU Dataset

    Optogenetic Activation of ID2/Nkx2.1 Interneurons in the Posterior Parietal Cortex During NREM Sleep

    Authors
    Manuel Valero
    Tim J. Viney
    Robert Machold
    Sara Mederos
    5 more author(s)...
    Description

    This study described a unique set of deep layer neurons in posterior parietal cortex (PPC) whose spiking activity is inversely correlated with all principal cells and interneurons in all brain states, but most commonly during the down state of non-REM (NREM) sleep. They identified down state-active (DSA) neurons as deep layer neocortical neurogliaform cells that express ID2 and Nkx2.1. For this study,...

    Subject
    Neurosciences
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  • NYU Dataset

    Inhibition Allocates Spikes During Hippocampal Ripples

    Authors
    Asako Noguchi
    Roman Huszar
    Shota Morikawa
    Gyorgy Buzsaki
    1 more author(s)...
    Description

    Spike sequences are exemplified by memory replays in sharp-wave ripples (SWRs) and high-frequency oscillations resulting from pyramidal cell-interneuron interactions in the hippocampus. However, the microcircuitry mechanism that enables such flexible spike sequencing remains unknown. This study recorded the membrane potentials of multiple hippocampal CA1 pyramidal cells in mice. For this study, whole-cell...

    Subject
    Neurosciences
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  • NYU Dataset

    Intra-axonal Space Segmentation from 3D Scanning Electron Microscopy (SEM) of the Mouse Brain Genu of Corpus Callosum

    Authors
    Hong-Hsi Lee
    Dmitry S. Novikov
    Els Fieremans
    Description

    This dataset includes 3D scanning electron microscopy (SEM) images of a female mouse corpus callosum and MATLAB code for random walker (RaW) segmentations of myelinated axons. The code additionally characterizes inner axonal diameters and fiber orientation dispersion within segments of the intra-axonal spaces and myelin sheaths. In the study, a female 8-week-old C57BL/6 mouse was perfused trans-cardiacally...

    Subject
    Anatomy
    Neurosciences
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  • NYU Dataset

    Evaluation of Metronomic Chemotherapy Response Using Diffusion and Dynamic Contrast-enhanced MRI

    Alternate Title(s)
    Evaluation of Metronomic Chemotherapy Response Using dMRI and DCE MRI
    Authors
    Mehran Baboli
    Kerryanne V. Winters
    Melanie Freed
    Jin Zhang
    1 more author(s)...
    Description

    The dataset contains data collected from twelve Balb/c mice with metastatic breast cancer (4T1 mammary tumors). Six mice were in the control group and six mice were treated with 5-Fluorouracil (5FU) for metronomic chemotherapy for two weeks. Diffusion MRI (dMRI) and Dynamic Contrast-enhanced MRI (DCE-MRI) images were collected at baseline and post-treatment. Immunohistochemically (IHC) stains and measurements...

    Subject
    Cancer
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  • NYU Dataset

    Two-Photon Imaging Indicates Dopamine Modulates the Size of Spiny Projection Neurons

    Authors
    Marta Maltese
    Jeffrey R. March
    Alexander G. Bashaw
    Nicolas X. Tritsch
    Description

    Dopamine is a critical modulator of brain circuits that control voluntary movements. However, its influence on the activity of target neurons in vivo remains limited. In this study, two-photon microscopy was used to monitor the activity of direct and indirect-pathway spiny projection neurons (SPNs) simultaneously in the striatum of behaving mice. The striatum mainly consists of two large populations...

    Subject
    Neurosciences
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  • NYU Dataset

    Mass Spectrometry Data Suggests Mitovesicles are Altered in Down Syndrome

    Authors
    Pasquale D'Acunzo
    Rocio Perez-Gonzalez
    Yohan Kim
    Tal Hargash
    11 more author(s)...
    Description

    This dataset showed that mitovesicles, extracellular vesicles (EVs) of mitochondrial origin, are altered in Down syndrome (DS). Mitochondrial dysfunction is a distinctive feature of aging and neurodegenerative disorders, such as DS and Alzheimer’s disease. For this study, a high-resolution density gradient separation of EVs isolated from murine and human DS and diploid control brains was used. Using...

    Subject
    Proteomics
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  • NYU Dataset

    Protemic Data Indicates Altered Steady State and De Novo Protein Expression in Fragile X Syndrome

    Authors
    Heather Bowling
    Aditi Bhattacharya
    Guoan Zhang
    Danyal Alam
    13 more author(s)...
    Description

    Fragile X syndrome (FXS) is caused by changes in FMR1 gene, which leads to transcriptional silencing and loss of its protein product fragile X mental retardation protein (FMRP). For this study, proteomic experiments were performed to investigate the de novo translational profile in FXS model mice is altered at steady state and in response to metabotropic glutamate receptor (mGluR) stimulation. Altered...

    Subject
    Proteomics
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  • NYU Dataset

    Studying Zika Virus Evolution In Vivo Using Insect-to-Mouse Transmission Model

    Authors
    Katherine E. E. Johnson
    Maria G. Noval
    Margarita V. Rangel
    Elfie De Jesus
    5 more author(s)...
    Description

    Arboviruses are caused by a group of viruses spread to people (host) by the bite of infected insects (vector). It is within these hosts that arboviruses replicate and undergo genomic evolution. However, how arboviruses evolve, are transmitted, or cause disease in nature remain unclear. Therefore, this study established a Zika virus (ZIKV) vector-borne transmission system in immunocompromised mice to...

    Subject
    Genomics
    Infectious Disease
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