NYU Dataset

Elongin A Regulates Transcription In Vivo Through Enhanced RNA Polymerase Processivity

Part of: Dynlacht Lab |
UID: 10650
* Corresponding Author
Description

Elongin, an RNA polymerase II (RNAPII)-associated factor, has shown to stimulate transcriptional elongation in vitro. The Elongin complex is assumed to be required for transcriptional induction in response to cellular stimuli. However, the role of this complex during transcription has not been studied in vivo. This study performed comprehensive studies of the role of Elongin A, the largest subunit of the Elongin complex, on RNAPII transcription genome-wide. The dataset contains RNA sequencing, 4-thiouridine sequencing, and ChIP sequencing data. In addition, the dataset contains mass spectrometry data. The results indicate that unlike in vitro findings, depletion of Elongin A has little impact on global transcription profiles and transcription elongation in vivo.

Subject of Study
Subject Domain
Keywords

Access

Restrictions
Free to All
Instructions
All next-generation sequencing data have been deposited to Gene Expression Omnibus (GEO). Mass spectrometry raw files are accessible under MassIVE and ProteomeXchange.
Access via GEO

Sequencing data
Accession #: GSE145368

Access via MassIVE

Mass spectrometry data
Accession #: MSV000085926

Access via ProteomeXchange

Mass spectrometry data
Accession #: PXD020796

Associated Publications
Data Type
Equipment Used
Illumina NextSeq 500
Illumina NovaSeq 6000
Thermo Scientific Q Exactive HF-X
Software Used
bedtools v2.27.1
Bowtie2 v2.3.4.1
deepTools v3.1.0
DESeq2
Enrichr
HOMER v4.10
MACS2 v2.1.1
Picard v1.88
Proteome Discoverer v1.4.0.288
SEQUEST
STAR v2.5.0c
Grant Support
Research Start-Up Funding/Nanjing Agricultural University