Project Tycho includes data from all weekly notifiable disease reports for the United States and elsewhere dating back to 1888. It includes data counts for 58 diseases and 92 conditions; the availability of data varies by condition and location. Data are available as pre-compiled datasets, through a data query system, and through an API. Pre-compiled datasets include 92 datasets on specific diseases...

This ongoing prospective cohort study examines a wide range of individual, social and structural factors as predictors of risk and resilience for behavioral outcomes (e.g., substance use and sexual activity), mental health conditions (e.g., depression, anxiety) and biological outcomes (e.g., HIV seroconversion, viral and bacterial sexually transmitted infections) in a sample of emerging adult men based...

The Demographic and Health Surveys (DHS) Program overseen by the US Agency for International AID (USAID) uses nationally representative surveys, biomarker testing, and geographic location to collect data on monitoring and impact evaluation indicators for individual countries and for cross-country comparisons. Standardized DHS surveys include the Demographic and Health Survey, Service Provision Assessment,...

The National Center for Advancing Translational Sciences (NCATS) has systematically compiled clinical, laboratory and diagnostic data from electronic health records to support COVID-19 research efforts via the National COVID Cohort Collaborative (N3C) Data Enclave. As of August 2, 2022, the repository contains information from over 15 million patients (including 5.8 million COVID-19 positive patients)...

The dataset includes 864 genomic sequences obtained from COVID-19 patients aged 18 years old and above within the NYU Langone Health system between March 12 and May 10, 2020. Patients reflected the health system's catchment area (i.e., the greater New York City metropolitan area). rRNA-depleted total RNA was sequenced, underwent quality control, and analyzed to produce phylogenetic trees. Further...

From 2020 through 2021, the Assessment Capacities Project (ACAPS) Government Measures dataset tracked government responses to the pandemic over time using information compiled by ACAPS analysts and volunteers from the University of Copenhagen and University of Lund. Information was obtained from public sources, including governments, media, United Nations agencies, and other organizations, and are...

This dataset evaluated 17 indicators of government response to COVID-19 to produce an aggregate Stringency Index score calculated by a working group at Oxford University. The indicators assess policies related to containment and closure, the economy, health systems, and vaccination policies. Data was collected between 2020 and 2022 via public sources by faculty, students, and other affiliates of Oxford...

A collaborative effort between Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE), Johns Hopkins University Applied Physics Lab (JHU APL), and ESRI Living Atlas Team, the repository contains data on confirmed COVID-19 cases, deaths, recoveries, and tests at the national and state/province province level from January 22, 2020 to March 10, 2023. Throughout the lifetime of...

The MIDAS (Models of Infectious Disease Agent Study) Online Portal for COVID-19 Modeling Research is a collection of publicly-available COVID-19 resources to support dashboard monitoring, data processing, modeling, and visualization efforts. Collections listed in the portal include case counts and case line lists with documented metadata, peer-reviewed and non-peer-reviewed parameter estimates, and...

The global dataset includes aggregated and anonymized daily mobility trends using data from users who turned on Google's Location History setting from February 2020 through October 2022. Mobility data is reported on a national level and for smaller administrative regions (e.g. states, provinces) where available. Locations are grouped into 6 categories: retail and recreation, grocery and pharmacy, parks,...