NYU Data Catalog

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Results Found: 4
  • NYU Dataset

    Dataset and Code to Model Dispersal Dynamics of SARS-CoV-2 Lineages During the First Epidemic Wave in New York City

    Authors
    Simon Dellicour
    Samuel L. Hong
    Bram Vrancken
    Antoine Chaillon
    9 more author(s)...
    Description

    To construct a fixed time-scaled phylogenetic tree, the investigators combined 828 viral genome sequences obtained from COVID-19 patients at NYU Langone Health between March and May 2020 with 1,899 background sequences that were contributed to the Nextstrain repository. A total of 2,727 SARS-CoV-2 genomic sequences are available in the dataset. The supporting R code included with the dataset will produce...

    Subject
    Genomics
    Infectious Disease
    Timeframe
    2020
    Access Rights
    Free to All
  • NYU Dataset

    SARS-CoV-2 Vaccine Breakthrough Infections in the NYU Langone Health System

    Authors
    Ralf Duerr
    Dacia Dimartino
    Christian Marier
    Paul Zappile
    5 more author(s)...
    Description

    This dataset contains a list of accession numbers of SARS-CoV-2 genomes obtained from 76 patients at NYU Langone Health who were fully vaccinated with the BNT162b2 (Pfizer/BioNTech), mRNA-1273 (Moderna), or JNJ-78436735 (Janssen) COVID-19 mRNA vaccines but had breakthrough infections between February 1 and April 30, 2021. 37 were male and 39 were female; the median age of patients was 48 years. There...

    Subject
    Genomics
    Infectious Disease
    Timeframe
    2021
    Access Rights
    Free to All
    Application Required
  • NYU Dataset

    Variant-specific introduction and dispersal dynamics of SARS-CoV-2 in New York City – from Alpha to Omicron

    Authors
    Simon Dellicour
    Samuel L. Hong
    Verity Hill
    Dacia Dimartino
    7 more author(s)...
    Description

    Utilizing genomic sequencing data collected from COVID-19 patients in New York City metropolitan area, investigators produced a comparison of the introduction and dispersal of the main SARS-CoV-2 variants (Alpha, Iota, Delta, and Omicron-BA.1) from 2020 through 2022. The analysis included 5,577 sequences obtained from samples collected as part of genomic surveillance at NYU Langone Health from December...

    Subject
    Genomics
    Infectious Disease
    Access Rights
    Free to All
  • NYU Dataset

    Emergence and dissemination of SARS-CoV-2 XBB.1.5 in New York

    Authors
    Fabiana Gámbaro
    Ralf Duerr
    Dacia Dimartino
    Christian Marier
    4 more author(s)...
    Description

    This study compared SARS-CoV-2 sequences that were collected from infected patients (n=2,397) who were seen at NYU Langone Health facilities and globally (n=24,060 sequences in GISAID) between August 1, 2022, and February 4, 2023 to understand the proliferation of Omicron strain XBB.1.5. Active SARS-CoV-2 infection was confirmed with positive real-time (RT)-qPCR testing. To assess the association between...

    Subject
    Genomics
    Infectious Disease
    Access Rights
    Free to All