Description

Brain metastasis is the most common intracranial malignancy in adults, which is often fatal. Studies have shown that brain metastases depend on cooperative cellular interactions between tumor cells and specialized cells within the central nervous system (CNS). Metabolic constraints imposed by the serine and glycine limited brain environment restrict metastatic tumor growth. This study showed that 3-phosphoglycerate dehydrogenase (PHGDH), which catalyzes the rate limiting step of glucose derived serine synthesis, is a major determinant of brain metastasis. The dataset contains proteomic, metabolomic, and immunohistochemistry data. The data revealed that extracellular amino acid availability determines serine synthesis pathway dependence, which suggests that PHGDH inhibitors may be useful in the treatment of brain metastasis.

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Associated Publications
Data Type
Equipment Used
Agilent 5977B GC/MSD
Agilent 7890B GC System
BD FACSCalibur
Beckman Coulter Z2
Bio-Rad ChemiDoc Plus
BioSpec BioSqueezer
Bruker BioSpec 3T
Bruker BioSpec 94/30
Eppendorf Centrifuge 5810 R
GE SPINlab Hyperpolarizer
Incucyte Live Cell Analysis System
IVIS Imaging System
Leica M205 FA
Multisizer Coulter Counter
NanoZoomer Digital Slide Scanner
SpeedVac
Tecan D300e Digital Dispenser
Thermo Scientific EASY-nLC 1200
Thermo Scientific Q Exactive
Thermo Scientific Q Exactive HF
UltiMate 3000 HPLC and UHPLC System
Ventana BanchMark XT
Software Used
edgeR
Fiji
FlowJo
GraphPad Prism
GSEAPreranked v6.0.10
HTSeq v0.9.1
limma
Living Image v2.50
MATLAB R2018a
MaxQuant v1.5.3.34
Microsoft Excel
NMF
Perseus v1.5.5.0
R v3.6.1
SIVIC
Visiopharm
Grant Support
Career Awards for Medical Scientists/Burroughs Wellcome Fund
Starr Cancer Consortium/Starr Cancer Consortium
HHMI Faculty Scholars/Howard Hughes Medical Institute
NSF Graduate Research Fellowship/National Science Foundation
Robertson Foundation/Robertson Foundation
Medical Research Fellows Program/Howard Hughes Medical Institute
Tow Foundation Fellowship Program/Center for Molecular Imaging and Bioengineering
Parker Institute for Cancer Immunotherapy/Memorial Sloan Kettering Cancer Center
W81XWH-16-1-0315/Department of Defense
Caroline Ross Endowment Fellowship/University of Texas MD Anderson Cancer Center
Schissler Foundation Fellowship/University of Texas MD Anderson Cancer Center
Presidents’ Research Scholarship/University of Texas MD Anderson Cancer Center
Donald E. and Delia B. Baxter Foundation/Donald E. and Delia B. Baxter Foundation
Prevent Cancer Foundation/Prevent Cancer Foundation
Wright Foundation/Wright Foundation
Pew-Stewart Scholars for Cancer Research/Pew Charitable Trusts
W81XWH-18-1-0491/Department of Defense
Breast Cancer Research Foundation/Breast Cancer Research Foundation
Dr. Miriam and Sheldon G. Adelson Medical Research Foundation/Dr. Miriam and Sheldon G. Adelson Medical Research Foundation
AIM at Melanoma Foundation/AIM at Melanoma Foundation
RP170401/Cancer Prevention and Research Institute of Texas
RP160183/Cancer Prevention and Research Institute of Texas
Multidisciplinary Reconstruction Research Program/University of Texas MD Anderson Cancer Center
Melanoma Moon Shot Program/University of Texas MD Anderson Cancer Center
Dana-Farber Harvard Cancer Center/Dana-Farber Harvard Cancer Center
Koch Institute Bridge Project/Massachusetts Institute of Technology
Lustgarten Foundation/Lustgarten Foundation
HU Ludwig Center/Harvard University
W81XWH-10-1-0016/Department of Defense
MIT Ludwig Center/Massachusetts Institute of Technology
Center for Precision Cancer Medicine/Massachusetts Institute of Technology
Stand Up To Cancer Innovative Research Grant/American Association for Cancer Research
Max Planck Society for the Advancement of Science/Max Planck Society for the Advancement of Science
Horizon 2020/European Union
7th Framework Programme for Research/European Union
Center for Protein Research/Novo Nordisk Foundation
Basser Initiative/Gray Foundation
Lori and Zachary Schreiber Family Fund/Schreiber Family Foundation
Roger and Susan Hertog Fund/Hertog Foundation
Cancer Research Grant/Mary Kay Foundation
Shifrin-Myers Breast Cancer Discovery Fund/NYU Langone Medical Center
V Foundation V Scholar Award/Hearst Foundation
MRA Young Investigator Award/Tara Miller Melanoma Foundation
John and Elaine Kanas Family Foundation/John and Elaine Kanas Family Foundation
Center for Biospecimen Research and Development/NYU Langone Medical Center
Metabolomics Laboratory/NYU Langone Health
Cancer Center Support Grant/NYU Perlmutter Cancer Center