NYU Dataset

Condensation of ORF1p is Critical for LINE-1 Retrotransposition

Part of: Holt Lab |
UID: 10644
* Corresponding Author
Description

Long interspersed element-1 (LINE-1) is an autonomously active retrotransposon in the human genome. The LINE-1 mRNA encodes two proteins, ORF1p and ORF2p, which are essential for retrotransposition. This study showed that electrostatic interactions and trimer conformational dynamics together tune the properties of ORF1p assemblies to allow for efficient LINE-1 ribonucleoprotein complex formation in cells using a combination of biochemical reconstitution and live-cell imaging.

The dataset includes supplementary data tied to the publication. The supplementary data contains source data for figures, which includes data for cytoplasmic and nuclear ORF1 puncta tracking, ORF1-ORF1 colocalization, ORF1-LINE-1 reporter RNA colocalization, wild-type ORF1p in vitro droplet fusion, wild-type, K3A/K4A, and R261A ORF1p cellular ORF1 puncta count, wild-type, K3A/K4A, and R261A LINE-1 retrotransposition. It also includes data for StammerDel, StammerAAA, and StammerAEA cellular ORF1 puncta count, StammerDel, StammerAAA, and StammerAEA LINE-1 retrotransposition, and ORF1p mutant in vitro droplet fusion.

Subject of Study
Subject Domain
Keywords

Access

Restrictions
Free to All
Instructions
All data generated or analyzed during this study are included in the paper on PubMed Central (PMC) under Supplementary Materials and codes are available at GitHub.
Access via PMC

Data
Accession #: PMC10202459

Associated Publications
Data Type
Equipment Used
LI-COR Odyssey CLx
Nikon Eclipse Ti
Photometrics Prime 95B
Sony SH800S
Thermo Scientific NanoDrop
Software Used
Fiji
FlowJo
GraphPad Prism v9.0
ImageJ
Microsoft Excel
NIS-Elements
scikit-image
Grant Support
Vilcek Scholar/Vilcek Scholarship
Chan Zuckerberg Initiative/Chan Zuckerberg Initiative
FA9550-21-1-3503 0091/Air Force Office of Scientific Research